30 docs tagged with "serotype"

Predict *Escherichia coli* serotype (O and H antigens).

In silico prediction of Escherichia coli serotype.

Predict *Haemophilus influenzae* capsule serotype.

In silico serotyping of the Haemophilus influenzae capsule locus.

Predict *Haemophilus parasuis* serotype.

Rapid Haemophilus parasuis serotyping.

Genotyping and screening of *Klebsiella* genome assemblies.

Predict *Listeria monocytogenes* serogroup.

In silico serotype prediction for Listeria monocytogenes.

Serotyping and finetyping of *Neisseria meningitidis*.

Predict serotypes of Neisseria meningitidis from genome assemblies.

MinER assisted species-specific bactopia tool seLectIoN.

Serotyping and Multi-Antigen Sequence Typing (MAST) of *Neisseria gonorrhoeae*.

Perform capsular typing of Streptococcus pneumoniae from NGS data.

Salmonella serotype prediction from genome sequencing data.

Predict Salmonella serotypes from genome assemblies.

k-mer based pipeline to identify the serotype of Streptococcus pneumoniae.

k-mer based Streptococcus pneumoniae serotyping.

Predict Shigella serotypes and differentiate Shigella/EIEC.

Predict serotypes of Shigella from assemblies.

Shigella serotype from Illumina or Oxford Nanopore reads.

Predict serotypes of Shigella from reads or assemblies.

Shigella and EIEC serotyping from assemblies.

Predict serotypes of Shigella and EIEC from assemblies.

Serovar prediction of Salmonella assemblies.

Salmonella In Silico Typing Resource command-line tool.

Serotype prediction of Streptococcus suis assemblies.

Predict serotypes of Streptococcus suis from genome assemblies.

Serotype of Shigatoxin producing E. coli using reads/assemblies.

Identify and serotype Shiga toxin-producing E. coli (STEC) from assemblies.